miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST048334
species: Brachypodium distachyon
source: PMRD, original name: bdi-miR2508

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTGAGTGCAGCGTTGATGAAC

miRNA*
 TCACCGGCGCTGCACACAGTGA

mismatches: 2
bulges: 0
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pre-miRNA
 GCAAAGGCATCATTGAGTGCAGCGTTGATGAACAGGGGCCAGGCGACCGGCGGCCGGTCCGGTTCGGTTCACCGGCGCTGCACACAGTGACGCCCTTGC

dot-bracket secondary structure
((((.(((.((((((.(((((((((((.(((((..(((((..(.((((((...)))))))))))).))))).))))))))))).)))))).))).))))


SIMILARITIES
miRBase bdi-MIR397b: 2e-51

PMRD bdi-miR397: 2e-51

microPC miR397: 0.000005		UniProt no hits

RFAM MIR397: 0.000000001

Identical with: bdi-MIR397b from miRBase (MNEST041798)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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